Publications

preprint

HyperMap: An Efficient Framework for Transferring Perturbation Responses Across Diverse Biological Contexts

B. Dhaka , J. Gao, T. Ideker

bioRxiv , 2026

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preprint

The human RNA–DNA interactome is cell type-specific and dynamic

A. Lambolez, P. Sahlén, W. Kang, X. Shu, J. Severin, R. Pracana, …, B. Dhaka , … et al. (FANTOM6 Consortium)

bioRxiv , 2026

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preprint

Hepatobiliary Progenitor-like Reprogramming in Liver Metastases

A. K. Sharma, N. Takahashi, Y. Cao, A. Joshi, S. Zhuang, A. Kazi, …, B. Dhaka , … et al.

bioRxiv , 2026

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preprint

Pan-cancer discovery of driver mutations in long noncoding RNAs reveals widespread functional rewiring of RNA regulatory elements

S. Ramnarayanan, R. Koya, M. Soszynska-Jozwiak, M. Szabat, J. Roban, S. Bhutada, B. Dhaka , … et al.

bioRxiv , 2026

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journal

Functional identification of cis-regulatory long noncoding RNAs at controlled false-discovery rates

B. Dhaka , M. Zimmerli, D. Hanhart, M. B. Moser, H. Guillen-Ramirez, S. Mishra, … et al.

Nucleic Acids Research , 2024

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journal

Prognostic association of immunoproteasome expression in solid tumours is governed by the immediate immune environment

R. Kumar*, B. Dhaka *, S. Sahoo, M. K. Jolly, R. Sabarinathan

Molecular Oncology , 2023

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journal

Differential chromatin accessibility landscape of gain-of-function mutant p53 tumours

B. Dhaka & R. Sabarinathan

BMC Cancer , 2021

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